Legacy CHEESE API
Endpoint reference
Generated request, response, and schema details for every legacy CHEESE API route.
Legacy API
These pages document the legacy hosted CHEESE API for existing integrations. New integrations should use the CHEESE API v2 quickstart and the v2 endpoint reference.
The endpoint pages below are generated from the legacy OpenAPI contract pinned with this
documentation build. The development host is https://api.cheese-dev.deepmedchem.com; production
is https://api.cheese.deepmedchem.com. See the Search API overview
for authentication and worked Python examples.
Search
- Search one molecule
- Search one molecule, simple
- Search array
- Search batch
- Search by embedding
- Search file
- Molsearch result paging
Jobs
Similarity and embeddings
- Similarity
- Batch similarity
- Similarity matrix
- Database similarity
- Embeddings
- Embeddings file
- Centroid embeddings
Prediction, clustering, and visualization
- Predict
- Predict array
- Cluster
- Nearest cluster
- Visualise
- Visualize file
- Similarity histograms
- Property histograms
Databases, downloads, and account
- Available databases
- Random molecules
- Prepare download
- Download link
- User downloads
- Rate-limit status —
served at both
/rate-limit/statusand the/rate_limit_statusalias - License information
- License key
- Health check
- Readiness
The pinned source contract is available at
/openapi-cheese-legacy.json.