Overview
Run the DMC Navigator production workflow on your own machine, fully offline — a resumable propose → dock → ingest loop over make-on-demand chemical space.
Run the DMC Navigator production workflow on your own machine, fully offline.
The on-prem package contains no source code and builds nothing. It pulls a
pre-built, obfuscated, license-gated container image from Deep-MedChem and wraps
it in a small navigator command. Your molecules, run state, and license never
leave your host.
Production updates arrive through the stable image channel. Deep-MedChem moves
that tag only after a reviewed on-prem release passes tests and image smoke
checks; you choose when to install it by running navigator update.
Principles
- Offline — after the image is pulled the workflow runs with no network
access. The one exception is
navigator data(downloading an encrypted database from Deep-MedChem's public bucket); databases are also installable fully offline from a local mirror (see Databases). - Licensed — the image only runs with a valid license issued for this machine (see Activate your license).
- Self-contained — run state lives in
./runs, inputs in./inputs, installed databases in./databases.
The workflow
Navigator drives a resumable optimization loop. The optimizer runs in the licensed container; you own and run the scoring step (e.g. Glide docking) in your own environment — Schrödinger is never inside the image.
init → propose a batch → you dock/score it → ingest scores → propose … → completepropose is a deterministic function of (observation archive, seed, iteration),
so a run is reproducible, resumable, and idempotent on re-ingestion.
Get started
1. Install
Clone the installer, run install_navigator.sh, authenticate, and pull the image.
2. Activate your license
Print the machine fingerprint and install the signed license.
3. Install a database
Download, verify, and decrypt a curated chemical space, or bring your own.
4. Run the workflow
Drive the propose → dock → ingest loop — the fast path or by hand.